ガンマプロテオバクテリア綱

ガンマプロテオバクテリア綱
コレラ菌Vibrio cholerae
タイプ属のシュードモナス属のタイプ種である緑膿菌Pseudomonas aeruginosa)の血液寒天培地上のコロニー
分類
ドメイン : 真正細菌
Bacteria
: Pseudomonadota
: ガンマプロテオバクテリア綱
Gammaproteobacteria
学名
Gammaproteobacteria
Garrity et al. 2005[1]
(IJSEMリストに掲載 2005)[2]
タイプ属
シュードモナス属
Pseudomonas

Migula 1894[3]
(IJSEMリストに掲載 1980)[4]
シノニム
  • クロマチウム綱
    Chromatiia
    Cavalier-Smith 2020[5]
目(2024年6月現在)[37]
  • アシディフェロバクター目
    Acidiferrobacterales
    小島久弥 et al. 2015[6]
    (IJSEMリストに掲載 2016)[7]
  • エアロモナス目
    Aeromonadales
    Martin-Carnahan and Joseph 2005[8]
    (IJSEMリストに掲載 2005)[2]
  • アルテロモナス目
    Alteromonadales
    Bowman and McMeekin 2005[9]
    (IJSEMリストに掲載 2005)[2]
  • アレニセラス目
    Arenicellales
    寺本真紀 et al. 2015[10]
    (IJSEMリストに掲載 2015)[11]
  • ベギアトア目
    Beggiatoales
    Buchanan 1957[12]
    (IJSEMリストに掲載 1980)[4]
  • カルディオバクテリウム目
    Cardiobacteriales[13]
    Garrity et al. 2005
    (IJSEMリストに掲載 2005)[2]
  • セルビブリオ目
    Cellvibrionales
    Spring et al. 2015[14]
    (IJSEMリストに掲載 2015)[15]
  • クロマチウム目
    Chromatiales
    Imhoff 2005[16]
    (IJSEMリストに掲載 2005)[2]
  • エンテロバクター目
    Enterobacterales
    Adeolu et al. 2016[17]
    (IJSEMリストに掲載 2017)[18]
  • Immundisolibacterales
    Corteselli et al. 2017[19]
    (IJSEMリストに掲載 2017)[20]
  • レジオネラ目
    Legionellales
    Garrity et al. 2005[21]
    (IJSEMリストに掲載 2005)[2]
  • ライソバクター目
    Lysobacterales
    Christensen and Cook 1978[22]
    (IJSEMリストに掲載 1980)[4]
    修正 Naushad et al. 2015[23]
    (IJSEMリストに掲載 2015)[24]
  • メチロコックス目
    Methylococcales
    Bowman 2005[25]
    (IJSEMリストに掲載 2005)[2]
  • ネブスキア目
    Nevskiales
    Naushad et al. 2015[23]
    (IJSEMリストに掲載 2015)[26]
  • オセアノスピリルム目
    Oceanospirillales
    Garrity et al. 2005[27]
    (IJSEMリストに掲載 2005)[2]
  • オルバス目
    Orbales
    Kwong and Moran 2013[28]
    (IJSEMリストに掲載 2013)[29]
  • パスツーレラ目
    Pasteurellales
    Garrity et al. 2005[30]
    (IJSEMリストに掲載 2005)[2]
  • シュードモナス目タイプ目
    Pseudomonadales
    Orla-Jensen 1921[31]
    (IJSEMリストに掲載 1980)[4]
    修正 2020[32]
    (IJSEMリストに掲載 2021)[33]
  • チオハロバクター目
    Thiohalobacterales
    Sorokin and Merkel 2023[34]
    (IJSEMリストに掲載 2023)[35]
  • Thiohalorhabdales
    Sorokin and Merkel 2023[36]
    (IJSEMリストに掲載 2023)[35]

ガンマプロテオバクテリア綱(ガンマプロテオバクテリアこう、Gammaproteobacteria)とは真正細菌Pseudomonadota門における綱の一つである。この綱の細菌はグラム陰性である。重要な病原菌を多く含む。

特徴

ガンマプロテオバクテリア綱には医学的、社会的に重要な細菌を多く含む。腸内細菌科Enterobacteriaceae)、ビブリオ科(Vibrionaceae)、シュードモナス科Pseudomonadaceae)などである。重要な病原菌にはSalmonella spp.(腸炎腸チフスの原因菌)やYersinia pestisペスト)、Vibrio choleraeコレラPseudomonas aeruginosa日和見感染による緑膿菌感染症)、Escherichia coli食中毒がいる。重要な植物病原菌にはXanthomonas axonopodis pv. citri(ミカン類潰瘍病)Pseudomonas syringae pv. actinidiae(キウイ)、Xylella fastidiosaがいる。クロマチウム属Chromatium)は光合成細菌であり、水の代わりに硫化水素を酸化し、硫黄を排出する。ガンマプロテオバクテリア綱の多くはメタン酸化細菌であり、一部は深海生物のチューブワームと共生している[38]

系統発生

Phylogeny of Gammaproteobacteria

Acidithiobacillus

Betaproteobacteria

Xanthomonadales

Chromatiales

Methylococcus

Beggiatoa

Legionellales

RuthiaVesicomyosociusThiomicrospiraDichelobacterFrancisella

Moraxellaceae, Alcalinovorax

Saccharophagus, Reinekea

Oceanospirillaceae

Marinobacter

Pseudomonadaceae

Pseudoalteromonadaceae, Alteromonas, Idiomarinaceae

Shewanellaceae

Psychromonadaceae

Aeromonas

Vibrionales

Pasteurellales

Enterobacterales

ガンマプロテオバクテリア綱の系統発生図[39]。単系統ではないためPseudomonadales目やOceanospirillales目、Alteromonadales目は科と属を示す。単系統の目は属のみを示す。(目は-ales、科は-aceae)

ガンマプロテオバクテリア綱はベータプロテオバクテリア綱の側縁である。以下の属は、帰属させる目と科がいまだ不明である。Alkalimarinus属、Alkalimonas属、Arenicella属、Gallaecimonas属、Ignatzschineria属、Litorivivens属、Marinicella属、Methylohalomonas属、Methylonatrum属、Plasticicumulans属、Pseudohongiella属、Sedimenticola属、Thiohalobacter属、Thiohalomonas属、Thiohalorhabdus属、Thiolapillus属およびWohlfahrtiimonas[37]

脚注

  1. ^ Garrity GM, Bell JA, Lilburn T. (2005). “Class III. Gammaproteobacteria class. nov.”. In Brenner DJ, Krieg NR, Staley JT, Garrity GM. Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 2 (The Proteobacteria), part B (The Gammaproteobacteria). New York: Springer. p. 1. ISBN 978-0-387-95040-2 
  2. ^ a b c d e f g h i “Validation of publication of new names and new combinations previously effectively published outside the IJSEM”. International Journal of Systematic and Evolutionary Microbiology: 2235-2238. (01 November 2005). doi:10.1099/ijs.0.64108-0. 
  3. ^ Migula W. (1894). “Arbeiten aus dem Bakteriologischen Institut der Technischen Hochschule zu Karlsruhe”. Über ein neues System der Bakterien 1: 235-238. 
  4. ^ a b c d V. B. D. Skerman, Vicki. McGOWAN and P. H. A. Sneath (01 January 1980). “Approved Lists of Bacterial Names”. International Journal of Systematic and Evolutionary Microbiology 30 (1): 225-420. doi:10.1099/00207713-30-1-225. 
  5. ^ Thomas Cavalier-Smith & Ema E-Yung Chao (03 January 2020). “Multidomain ribosomal protein trees and the planctobacterial origin of neomura (eukaryotes, archaebacteria)”. Protoplasma 257 (3): 621-753. doi:10.1007/s00709-019-01442-7. PMC 7203096. PMID 31900730. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7203096/. 
  6. ^ Hisaya Kojima, Arisa Shinohara and Manabu Fukui (01 October 2015). “Sulfurifustis variabilis gen. nov., sp. nov., a sulfur oxidizer isolated from a lake, and proposal of Acidiferrobacteraceae fam. nov. and Acidiferrobacterales ord. nov.”. International Journal of Systematic and Evolutionary Microbiology 65 (Pt_10): 3709-3713. doi:10.1099/ijsem.0.000479. PMID 26220671. 
  7. ^ Aharon Oren and George M. Garrity (01 January 2016). “Notification that new names of prokaryotes, new combinations and new taxonomic opinions have appeared in volume 65, part 10, of the IJSEM”. International Journal of Systematic and Evolutionary Microbiology 66 (1): 4-6. doi:10.1099/ijsem.0.000745. 
  8. ^ Martin-Carnahan A, Joseph SW (2005). “Order XII. Aeromonadales ord. nov.”. In Brenner DJ, Krieg NR, Staley JT, Garrity GM. Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 2 (The Proteobacteria), part B (The Gammaproteobacteria). Springer, New York. p. 556 
  9. ^ Bowman JP, McMeekin TA (2005). “Order X. Alteromonadales ord. nov.”. In Brenner DJ, Krieg NR, Staley JT, Garrity GM. Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 2 (The Proteobacteria), part B (The Gammaproteobacteria). Springer, New York. p. 443 
  10. ^ Maki Teramoto, Ken-ichi Yagyu and Miyuki Nishijima (01 February 2015). “Perspicuibacter marinus gen. nov., sp. nov., a semi-transparent bacterium isolated from surface seawater, and description of Arenicellaceae fam. nov. and Arenicellales ord. nov.”. International Journal of Systematic and Evolutionary Microbiology 65 (Pt_2): 353-358. doi:10.1099/ijs.0.064683-0. PMID 25355707. 
  11. ^ Aharon Oren and George M. Garrity (01 May 2015). “Notification that new names of prokaryotes, new combinations, and new taxonomic opinions have appeared in volume 65, part 2, of the IJSEM”. International Journal of Systematic and Evolutionary Microbiology 65 (Pt_5): 1397-1399. doi:10.1099/ijs.0.000142. 
  12. ^ Buchanan RE (1957). “Order VII. Beggiatoales Buchanan, Ordo Nov”. In Breed RS, Murray EGD, Smith NR. Bergey’s Manual of Determinative Bacteriology, 7th ed.. The Williams and Wilkins Co., Baltimore. pp. 837-853 
  13. ^ Garrity GM, Bell JA, Lilburn T (2005). “Order IV. Cardiobacteriales ord. nov.”. In Brenner DJ, Krieg NR, Staley JT, Garrity GM. Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 2 (The Proteobacteria), part B (The Gammaproteobacteria). Springer, New York. p. 123 
  14. ^ Stefan Spring, Carmen Scheuner, Markus Göker, Hans-Peter Klenk (09 April 2015). “A taxonomic framework for emerging groups of ecologically important marine gammaproteobacteria based on the reconstruction of evolutionary relationships using genome-scale data”. Frontiers in Microbiology 6 (281): 281. doi:10.3389/fmicb.2015.00281. PMC 4391266. PMID 25914684. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4391266/. 
  15. ^ Aharon Oren and George M. Garrity (01 July 2015). “List of new names and new combinations previously effectively, but not validly, published”. International Journal of Systematic and Evolutionary Microbiology 65 (Pt_7): 2017-2025. doi:10.1099/ijs.0.000317. 
  16. ^ Imhoff JF (2005). “Order I. Chromatiales ord. nov.”. In Brenner DJ, Krieg NR, Staley JT, Garrity GM. Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 2 (The Proteobacteria), part B (The Gammaproteobacteria). Springer, New York. pp. 1-3 
  17. ^ Mobolaji Adeolu, Seema Alnajar, Sohail Naushad and Radhey S. Gupta (01 December 2016). “Genome-based phylogeny and taxonomy of the ‘Enterobacteriales’: proposal for Enterobacterales ord. nov. divided into the families Enterobacteriaceae, Erwiniaceae fam. nov., Pectobacteriaceae fam. nov., Yersiniaceae fam. nov., Hafniaceae fam. nov., Morganellaceae fam. nov., and Budviciaceae fam. nov.”. International Journal of Systematic and Evolutionary Microbiology 66 (12): 5575-5599. doi:10.1099/ijsem.0.001485. PMID 27620848. 
  18. ^ Aharon Oren and George M. Garrity (01 March 2017). “Notification that new names of prokaryotes, new combinations and new taxonomic opinions have appeared in volume 66, part 12, of the IJSEM”. International Journal of Systematic and Evolutionary Microbiology 67 (3): 525-528. doi:10.1099/ijsem.0.001834. 
  19. ^ Elizabeth M. Corteselli, Michael D. Aitken and David R. Singleton (01 April 2017). “Description of Immundisolibacter cernigliae gen. nov., sp. nov., a high-molecular-weight polycyclic aromatic hydrocarbon-degrading bacterium within the class Gammaproteobacteria, and proposal of Immundisolibacterales ord. nov. and Immundisolibacteraceae fam. nov.”. International Journal of Systematic and Evolutionary Microbiology 67 (4): 925-931. doi:10.1099/ijsem.0.001714. 
  20. ^ Aharon Oren and George M. Garrity (01 July 2017). “Notification that new names of prokaryotes, new combinations, and new taxonomic opinions have appeared in volume 67, part 4, of the IJSEM”. International Journal of Systematic and Evolutionary Microbiology 67 (7): 2079-2080. doi:10.1099/ijsem.0.002098. 
  21. ^ Garrity GM, Bell JA, Lilburn T (2005). “Order VI. Legionellales ord. nov.”. In Brenner DJ, Krieg NR, Staley JT, Garrity GM. Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 2 (The Proteobacteria), part B (The Gammaproteobacteria). Springer, New York. pp. 210 
  22. ^ PENELOPE CHRISTENSEN and F. D. COOK (01 July 1978). “Lysobacter, a New Genus of Nonfruiting, Gliding Bacteria with a High Base Ratio”. International Journal of Systematic and Evolutionary Microbiology 28 (3): 367-393. doi:10.1099/00207713-28-3-367. 
  23. ^ a b Sohail Naushad, Mobolaji Adeolu, Shirley Wong, Misbah Sohail, Herbert E Schellhorn, Radhey S Gupta (07 December 2014). “A phylogenomic and molecular marker based taxonomic framework for the order Xanthomonadales: proposal to transfer the families Algiphilaceae and Solimonadaceae to the order Nevskiales ord. nov. and to create a new family within the order Xanthomonadales, the family Rhodanobacteraceae fam. nov., containing the genus Rhodanobacter and its closest relatives”. Antonie van Leeuwenhoek 107 (2): 467–485. doi:10.1007/s10482-014-0344-8. PMID 25481407. 
  24. ^ Aharon Oren and George M. Garrity (01 July 2015). “Notification of changes in taxonomic opinion previously published outside the IJSEM”. International Journal of Systematic and Evolutionary Microbiology 65 (Pt_7): 2028-2029. doi:10.1099/ijs.0.000286. 
  25. ^ Bowman JP (2005). “Order VII. Methylococcales ord. nov.”. In Brenner DJ, Krieg NR, Staley JT, Garrity GM. Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 2 (The Proteobacteria), part B (The Gammaproteobacteria). Springer, New York. pp. 248-252 
  26. ^ Aharon Oren and George M. Garrity (01 April 2015). “List of new names and new combinations previously effectively, but not validly, published”. International Journal of Systematic and Evolutionary Microbiology 65 (Pt_4): 1105-1111. doi:10.1099/ijs.0.000178. 
  27. ^ Brenner DJ, Krieg NR, Staley JT, Garrity GM, ed (2005). Order VIII. Oceanospirillales ord. nov.. “Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 2 (The Proteobacteria), part B (The Gammaproteobacteria)”. Garrity GM, Bell JA, Lilburn T (Springer, New York): 270. 
  28. ^ “Cultivation and characterization of the gut symbionts of honey bees and bumble bees: description of Snodgrassella alvi gen. nov., sp. nov., a member of the family Neisseriaceae of the Betaproteobacteria , and Gilliamella apicola gen. nov., sp. nov., a member of Orbaceae fam. nov., Orbales ord. nov., a sister taxon to the order ‘ Enterobacteriales ’ of the Gammaproteobacteria”. International Journal of Systematic and Evolutionary Microbiology 63 (Pt_6): 2008-2018. (01 June 2013). doi:10.1099/ijs.0.044875-0. PMID 23041637. 
  29. ^ Aharon Oren and George M. Garrity (01 September 2013). “Notification that new names and new combinations have appeared in volume 63, part 6, of the IJSEM”. International Journal of Systematic and Evolutionary Microbiology 63 (Pt_9): 3135-3137. doi:10.1099/ijs.0.055343-0. 
  30. ^ Garrity GM, Bell JA, Lilburn T (2005). “Order XIV. Pasteurellales ord. nov.”. In Brenner DJ, Krieg NR, Staley JT, Garrity GM. Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 2 (The Proteobacteria), part B (The Gammaproteobacteria). Springer, New York. pp. 850. 
  31. ^ S. Orla-Jensen (1 May 1921). “The Main Lines of the Natural Bacterial System”. Journal of Bacteriology 6 (3): 263-73. doi:10.1128/jb.6.3.263-273.1921. PMC 378931. PMID 16558921. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC378931/. 
  32. ^ Hu Liao, Xiaolan Lin, Yuqian Li, Mingming Qu, Yun Tian (2020 Sep 15). “Reclassification of the Taxonomic Framework of Orders Cellvibrionales, Oceanospirillales, Pseudomonadales, and Alteromonadales in Class Gammaproteobacteria through Phylogenomic Tree Analysis”. mSystems 5 (5). doi:10.1128/mSystems.00543-20. PMC 7498684. PMID 32934116. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7498684/. 
  33. ^ Aharon Oren and George M. Garrity (29 January 2021). “Notification of changes in taxonomic opinion previously published outside the IJSEM”. International Journal of Systematic and Evolutionary Microbiology 71 (1): 225-420. doi:10.1099/ijsem.0.004596. 
  34. ^ Dimitry Y. Sorokin, Alexander Y. Merkel (09 March 2023). “Thiohalobacterales ord. nov.”. In Anonymous NN. Bergey's Manual of Systematics of Archaea and Bacteria.. John Wiley & Sons, New York. pp. 1-4 
  35. ^ a b Aharon Oren and George M. Garrity (August 2023). “Validation List no. 212. Valid publication of new names and new combinations effectively published outside the IJSEM”. International Journal of Systematic and Evolutionary Microbiology 73 (7): 5931. doi:10.1099/ijsem.0.005931. 
  36. ^ Dimitry Y. Sorokin, Alexander Y. Merkel (09 March 2023). “Thiohalorhabdales ord. nov.”. In Anonymous NN. Bergey's Manual of Systematics of Archaea and Bacteria.. John Wiley & Sons, New York. pp. 1-3. doi:10.1002/9781118960608.obm00183 
  37. ^ a b “Classification of domains and phyla - Hierarchical classification of prokaryotes (bacteria) - Gammaproteobacteria”. List of Prokaryotic Names with Standing in Nomenclature. 2017年1月13日閲覧。
  38. ^ http://comenius.susqu.edu/biol/202/EUBACTERIA/PROTEOBACTERIAE/gammaproteobacteria-frame.htm
  39. ^ Williams, K. P.; Gillespie, J. J.; Sobral, B. W. S.; Nordberg, E. K.; Snyder, E. E.; Shallom, J. M.; Dickerman, A. W. (2010). “Phylogeny of Gammaproteobacteria”. Journal of Bacteriology 192 (9): 2305–2314. doi:10.1128/JB.01480-09. PMC 2863478. PMID 20207755. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2863478/. 

外部リンク

分類群識別子