SETD5

Protein-coding gene in the species Homo sapiens
SETD5
Identifiers
AliasesSETD5, SET domain containing 5, MRD23, SETD5A
External IDsOMIM: 615743; MGI: 1920145; HomoloGene: 12485; GeneCards: SETD5; OMA:SETD5 - orthologs
Gene location (Human)
Chromosome 3 (human)
Chr.Chromosome 3 (human)[1]
Chromosome 3 (human)
Genomic location for SETD5
Genomic location for SETD5
Band3p25.3Start9,397,615 bp[1]
End9,479,240 bp[1]
Gene location (Mouse)
Chromosome 6 (mouse)
Chr.Chromosome 6 (mouse)[2]
Chromosome 6 (mouse)
Genomic location for SETD5
Genomic location for SETD5
Band6|6 E3Start113,077,365 bp[2]
End113,153,435 bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • epithelium of colon

  • sural nerve

  • right hemisphere of cerebellum

  • right uterine tube

  • right lobe of thyroid gland

  • ventricular zone

  • body of uterus

  • left lobe of thyroid gland

  • gastric mucosa

  • left ovary
Top expressed in
  • genital tubercle

  • tail of embryo

  • hand

  • ascending aorta

  • aortic valve

  • vas deferens

  • ventricular zone

  • Rostral migratory stream

  • human fetus

  • pineal gland
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
  • protein binding
  • histone methyltransferase activity (H3-K9 specific)
  • methyltransferase activity
  • transferase activity
  • histone-lysine N-methyltransferase activity
Cellular component
  • nucleus
  • Cdc73/Paf1 complex
  • nucleoplasm
Biological process
  • regulation of histone acetylation
  • regulation of chromatin organization
  • transcription, DNA-templated
  • regulation of transcription, DNA-templated
  • chromatin organization
  • histone H3-K9 methylation
  • methylation
  • histone lysine methylation
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

55209

72895

Ensembl

ENSG00000168137

ENSMUSG00000034269

UniProt

Q9C0A6

Q5XJV7

RefSeq (mRNA)

NM_001080517
NM_001292043
NM_018187
NM_001349451

NM_028385
NM_173005

RefSeq (protein)

NP_001073986
NP_001278972
NP_001336380

NP_082661
NP_766593

Location (UCSC)Chr 3: 9.4 – 9.48 MbChr 6: 113.08 – 113.15 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

SET domain containing 5 is a protein that in humans is encoded by the SETD5 gene. [5] It is a member of the histone lysine methyltransferase family. Overexpression of SETD5 is associated positively with progression of breast cancer.[6] Mutations in SETD5 are associated with a rare developmental disorder termed autosomal dominant mental retardation-23 (MRD23, MIM#615761).[7] MRD23 is mainly characterized by variable congenital defects and dysmorphic facies. Clinical features include developmental delay, intellectual disability, chewing abnormalities, hypospadias, and cryptorchidism in males in association with craniofacial dysmorphisms.

References

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000168137 – Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000034269 – Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ "Entrez Gene: SET domain containing 5". Retrieved 2013-10-07.
  6. ^ L. Liu, S. Kimball, H. Liu, A. Holowatyj, Z.Q. Yang (2015). Genetic alterations of histone lysine methyltransferases and their significance in breast cancer, Oncotarget, 6, pp. 2466-2482. https://doi.org/10.18632/oncotarget.2967
  7. ^ Grozeva, D., Carss, K., Spasic-Boskovic, O., Parker, M. J., Archer, H., Firth, H. V., Park, S. M., Canham, N., Holder, S. E., Wilson, M., Hackett, A., Field, M., Floyd, J. A., UK10K Consortium, Hurles, M., & Raymond, F. L. (2014). De novo loss-of-function mutations in SETD5, encoding a methyltransferase in a 3p25 microdeletion syndrome critical region, cause intellectual disability. American Journal of Human Genetics, 94, 618–624. https://doi.org/10.1016/j.ajhg.2014.03.006


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